M. Šikić. "Facilitating genome structural variation analysis" Nature Methods, 1-2. 2023, Nature Publishing Group US A.H. Lim, Z.J. Low, P.N. Shingate, J.H. Hong, S.C. Chong, C.C.Y. Ng, W. Liu, R. Vaser, M. Šikić, W.K.K. Sung, N. Nagarajan, P. Tan, B.T. Teh. "Genome assembly and chemogenomic profiling of National Flower of Singapore Papilionanthe Miss Joaquim ‘Agnes’ reveals metabolic pathways regulating floral …" Communications Biology, 5(1), 967. 2022, Nature Publishing Group UK T.A. Nguyen, J.W.J. Heng, P. Kaewsapsak, E.P.L. Kok, D. Stanojević, H. Liu, A. Cardilla, A. Praditya, Z. Yi, M. Lin, J.G.A. Aw, Y.Y. Ho, K.L.E. Peh, Y. Wang, Q. Zhong, J. Heraud-Farlow, S. Xue, B. Reversade, C. Walkley, Y.S. Ho, M. Šikić, Y. Wan, M.H. Tan. "Direct identification of A-to-I editing sites with nanopore native RNA sequencing" Nature Methods, 19(7), 833-844. 2022, Nature Publishing Group US L. Vrček, X. Bresson, T. Laurent, M. Schmitz, M. Šikić. "Learning to Untangle Genome Assembly with Graph Convolutional Networks" arXiv preprint arXiv 2206.00668. 2022 D. Stanojevic, Z. Li, R. Foo, M. Sikic. "Rockfish, A Transformer-based Model for Accurate 5-Methylcytosine Prediction from Nanopore Sequencing" bioRxiv, 2022.11.11.513492. 2022, Cold Spring Harbor Laboratory S. Duvnjak, Ž. Pavlinec, R. Vaser, K. Križanović, M. Šikić, M. Zdelar-Tuk, I. Reil, S. Špičić. "Efficacy of next-generation sequencing in bacterial zoonoses diagnostics" Veterinarska stanica, 53(1), 1-10. 2022, Hrvatski veterinarski institut R Vaser, M Šikić. "Time-and memory-efficient genome assembly with Raven" Nature Computational Science, 1-5. 2021 Y Chen, N Davidson, YK Wan, H Patel, F Yao, HM Low, C Hendra et al. "A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines" bioRxiv. 2021 L Vrček, P Veličković, M Šikić. "A step towards neural genome assembly" arXiv preprint arXiv 2011.05013. 2020 J Maric, K Krizanovic, S Riondet, N Nagarajan, M Šikić. "Benchmarking metagenomic classification tools for long-read sequencing data" bioRxiv. 2020 R Vaser, M Šikić. "Yet another de novo genome assembler" 2019 11th International Symposium on Image and Signal Processing and … 2019 M Piškorec, T Šmuc, M Šikić. "Disentangling sources of influence in online social networks" IEEE access 7, 131692-131704. 2019 D Bertrand, J Shaw, M Kalathiyappan, AHQ Ng, MS Kumar, C Li et all. "Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes" Nature biotechnology 37 (8), 937-944. 2019 J Marić, M Šikić "Approaches to metagenomic classification and assembly" 2019 42nd International Convention on Information and Communication … 2019 T Šebrek, J Tomljanović, J Krapac, M Šikić. "Read classification using semi-supervised deep learning" arXiv preprint arXiv:1904.10353. 2019 N Miculinić, M Ratković, M Šikić. "MinCall-MinION end2end convolutional deep learning basecaller" arXiv preprint arXiv:1904.10337 2. 2019 J Marić, I Sović, K Križanović, N Nagarajan, M Šikić. "Graphmap2-splice-aware RNA-seq mapper for long reads" bioRxiv, 720458 1. 2019 K Križanović, A Echchiki, J Roux, M Šikić. "Evaluation of tools for long read RNA-seq splice-aware alignment" Bioinformatics 34 (5), 748-754. 2018 More publications ...